biomcp

概述

BioMCP 通过统一的命令语法解决了生物医学数据检索的复杂性，使用户能够搜索、聚焦和在不同数据源之间切换。该服务器支持 13 种实体类型，包括基因、变异、文章、试验、药物、疾病、通路等。BioMCP 可以作为本地二进制文件、PyPI 包或 HTTP 服务器运行，并可作为 Claude Desktop 的扩展使用。它提供文献搜索、实体切换、研究分析和富集功能等多种特性。

试试问 AI

装完之后，这里有 5 个你可以让 AI 做的事：

• searchsearch <entity> [filters]

  Discovery search across biomedical entities

  试试:Search articles about BRAF and melanoma试试:Find clinical trials for melanoma
• suggestsuggest <question>

  Route biomedical questions to worked examples and starter commands

  试试:What drugs treat melanoma?试试:How to analyze variant rs113488022?
• getget <entity> <id> [sections]

  Get detailed information about a specific biomedical entity

  试试:Get details for gene BRAF试试:Get information about variant BRAF V600E
• enrichenrich <GENE1,GENE2,...>

  Perform gene-set enrichment analysis using g:Profiler

  试试:Enrich genes BRAF, KRAS, NRAS试试:Analyze enrichment for TP53 and BRCA1
• batchbatch <entity> <id1,id2,...>

  Get details for multiple entities in parallel

  试试:Batch get genes BRAF, KRAS, NRAS试试:Get details for variants BRAF V600E, BRAF V600E_K601E
• discoverdiscover <query>

  Resolve biomedical concepts before entity selection

  试试:Discover genes related to melanoma试试:Resolve drug names for targeted therapy
• studystudy <command>

  Local study analytics for cBioPortal-style datasets

  试试:Query study msk_impact_2017 for TP53 mutations试试:Analyze survival in study cohort
• listlist <entity>

  List available options for an entity type

  试试:List all available genes试试:Show diseases in the database
• healthhealth

  Check API connectivity and status

  试试:Check API health试试:Verify all services are available
• skillskill <command>

  Manage BioMCP agent skills and workflows

  试试:Install BioMCP skills试试:List available skills
• drug interactionsdrug interactions <drug>

  Find drug interactions for a specific medication

  试试:Find interactions for warfarin试试:Check interactions with pembrolizumab
• article entitiesarticle entities <article_id>

  Extract entities from a specific article

  试试:Find entities in article 22663011试试:Get entities from PMID:12345678

可对比工具

安装

curl -fsSL https://biomcp.org/install.sh | bash

uv tool install biomcp-cli
# 或: pip install biomcp-cli

{
  "mcpServers": {
    "biomcp": {
      "command": "biomcp",
      "args": ["serve"]
    }
  }
}

biomcp serve-http --host 127.0.0.1 --port 8080

FAQ

BioMCP 集成了哪些生物医学数据源？

BioMCP 集成了 13 种以上的生物医学数据源，包括 PubTator3、Europe PMC、MyGene.info、UniProt、Reactome、ClinicalTrials.gov 等，具体取决于实体类型。

BioMCP 是否需要 API 密钥才能运行？

大多数命令无需凭据即可运行，但可选的 API 密钥可以提高速率限制或解锁额外功能，如 Semantic Scholar 访问、OncoKB 变体数据和 DisGeNET 关联。

biomcp 对比