pubmed-mcp-server

概述

该 MCP 服务器深度集成 PubMed 和 NCBI E-utilities API，支持文章搜索、元数据获取、全文检索、引文生成、MeSH 术语探索和相关研究发现。基于 TypeScript 构建，代码结构良好，支持 STDIO 和 HTTP 传输方式。实现了针对 NCBI API 请求的适当速率限制，并包含 Unpaywall 回退机制用于全文检索。项目维护良好，文档清晰，提供多种部署场景的示例。

试试问 AI

装完之后，这里有 3 个你可以让 AI 做的事：

• pubmed_search_articles

  Search PubMed with full query syntax and filters

  试试:Find articles about CRISPR gene editing published in the last 5 years试试:Search for clinical trials related to Alzheimer's treatment试试:Find papers by author 'Smith JB' in Nature journal
• pubmed_fetch_articles

  Fetch full article metadata by PubMed IDs

  试试:Get details for PMID: 12345678试试:Fetch metadata for articles with PMIDs 123, 456, and 789试试:Show me full information for PMID: 87654321
• pubmed_fetch_fulltext

  Fetch full-text articles from PubMed Central with Unpaywall fallback

  试试:Get the full text for PMID: 12345678试试:Fetch article content for PMC12345试试:Retrieve the full text for DOI: 10.1234/example
• pubmed_format_citations

  Generate formatted citations in APA, MLA, BibTeX, or RIS

  试试:Generate APA 7th citation for PMID: 12345678试试:Format these PMIDs in MLA 9th style: 123, 456, 789试试:Create BibTeX citations for articles with IDs 12345 and 67890
• pubmed_find_related

  Find similar articles, citing articles, or references for a given PMID

  试试:Find articles similar to PMID: 12345678试试:Show me papers that cite PMID: 87654321试试:Get references for article with PMID: 11111111
• pubmed_spell_check

  Spell-check biomedical queries using NCBI's ESpell service

  试试:Check spelling for 'diabetus mellitus' search term试试:Correct 'myocardial infarcion' for my search试试:Verify 'neorodegenerative diseases' query
• pubmed_lookup_mesh

  Search and explore MeSH vocabulary with tree numbers and scope notes

  试试:Find MeSH term for 'COVID-19'试试:Show details for 'Breast Neoplasms' MeSH term试试:Explore 'Diabetes Mellitus' in MeSH vocabulary
• pubmed_lookup_citation

  Resolve partial bibliographic references to PubMed IDs via ECitMatch

  试试:Find PMID for: Nature 2023; 590(7846): 123-456试试:Match reference: Smith JB, et al. Lancet. 2022; 400(10345): 78-90试试:Resolve citation: JAMA 2021; 326(12): 1156
• pubmed_convert_ids

  Convert between DOI, PMID, and PMCID using PMC ID Converter

  试试:Convert DOI 10.1234/example to PMID试试:Find PMCID for PMID: 12345678试试:Convert these PMIDs to DOIs: 123, 456, 789

可对比工具

安装

{
  "mcpServers": {
    "pubmed": {
      "type": "streamable-http",
      "url": "https://pubmed.caseyjhand.com/mcp"
    }
  }
}

bunx @cyanheads/pubmed-mcp-server@latest

npx -y @cyanheads/pubmed-mcp-server@latest

docker run -i --rm ghcr.io/cyanheads/pubmed-mcp-server:latest

{
  "mcpServers": {
    "pubmed": {
      "command": "bunx",
      "args": ["@cyanheads/pubmed-mcp-server@latest"]
    }
  }
}

pubmed-mcp-server 对比