knowledgebase-mcp

概述

BioContextAI 知识库 MCP 是一个专用的模型上下文协议服务器，连接 AI 系统与生物医学资源。它通过标准化访问层连接多个 API，包括 Ensembl、EuropePMC、KEGG 和 STRING，使 LLM 能够检索经过验证的生物医学信息。该服务器支持本地部署和云托管，提供全面的文档和集成选项，包括 Claude Desktop 和流行 IDE 环境。

试试问 AI

装完之后，这里有 5 个你可以让 AI 做的事：

• antibody_registry

  Gene id conversion through Antibody Registry

  试试:Convert gene symbol to Entrez ID using Antibody Registry试试:Find antibodies for a specific gene
• biorxiv_medrxiv

  Search recent preprints and access metadata from bioRxiv/medRxiv

  试试:Find recent preprints about COVID-19 vaccines试试:Search medRxiv for papers on machine learning in healthcare
• ensembl

  Gene ID conversion and information from Ensembl

  试试:Convert Ensembl gene ID to symbol试试:Get gene information for ENSG00000141510
• europmc

  Literature search and full-text access from EuropePMC

  试试:Find recent papers about CRISPR gene editing试试:Search for full-text articles on Alzheimer's disease treatment
• interpro

  Protein families, domains, and functional sites classification

  试试:Find protein domains for P53试试:Classify protein sequence families
• kegg

  Access pathways, gene and drug-drug interaction database from KEGG

  试试:Find the insulin signaling pathway in KEGG试试:Get drug-drug interactions for metformin
• opentargets

  Access target-disease associations from OpenTargets

  试试:Find disease associations for the BRCA1 gene试试:Get targets for Alzheimer's disease
• panglaodb

  Access single-cell RNA-seq cell type markers from PanglaoDB

  试试:Find cell markers for T cells试试:Get markers for neurons in the human brain
• pride

  Access proteomics data repository from PRIDE

  试试:Find mass spectrometry datasets for breast cancer试试:Search for proteomics data related to protein folding
• protein_atlas

  Access protein expression data from Protein Atlas

  试试:Find expression levels of the BRCA1 protein试试:Get tissue-specific expression for TP53
• reactome

  Access pathways database from Reactome

  试试:Find the apoptosis pathway in Reactome试试:Get information about DNA repair mechanisms
• string

  Access protein-protein interaction networks from STRING

  试试:Find protein interactions for p53试试:Get interaction network for insulin receptor

可对比工具

安装

{
  "mcpServers": {
    "biocontext_kb": {
      "command": "uvx",
      "args": [
        "biocontext_kb@latest"
      ],
      "env": {
        "UV_PYTHON": "3.12"
      }
    }
  }
}

export MCP_ENVIRONMENT=PRODUCTION && export PORT=8000 && uvx biocontext_kb

export MCP_ENVIRONMENT=DEVELOPMENT && uvx biocontext_kb

{
  "mcpServers": {
    "biocontext_kb": {
      "command": "uvx",
      "args": [
        "biocontext_kb@latest"
      ]
    }
  }
}

FAQ

我可以商业使用这个 MCP 服务器吗？

该项目使用 Apache 2.0 许可证，但各个 API 可能有自己的服务条款。用户必须同时遵守 Apache 许可证和每个集成 API 提供商的条款。

有哪些生物医学资源可用？

该服务器提供对 15+ 个生物医学数据库的访问，包括 Ensembl、EuropePMC、KEGG、STRING、AlphaFold DB、Reactome 等。完整列表请参见 README 文档。

knowledgebase-mcp 对比