fhir-mcp-server

Overview

FHIR MCP Server implements a complete Model Context Protocol server designed to enable seamless interaction between LLM-based agents and FHIR-compliant healthcare systems. It provides full CRUD operations on FHIR resources through a comprehensive suite of tools accessible from MCP-compatible clients like Claude Desktop. The server features FastMCP framework, intelligent document processing, semantic search using vector embeddings, OAuth2 authentication, and LOINC medical terminology integration.

Try asking AI

After installing, here are 5 things you can ask your AI assistant:

• request_patient_resource

  Manage patient demographic and administrative information

  Try:Get patient information for John DoeTry:Update patient contact details
• request_observation_resource

  Handle clinical measurements and assessments

  Try:Retrieve recent lab results for patient 123Try:Find all observation records for blood pressure
• request_condition_resource

  Manage patient problems and diagnoses

  Try:List all current conditions for patient 456Try:Check if hypertension is listed as a diagnosis
• request_medication_resource

  Handle medication information and orders

  Try:Show current medications for patient 789Try:Add new medication prescription to patient record
• request_encounter_resource

  Handle patient visits and interactions

  Try:Find all encounters for patient 123 this yearTry:Get details from last visit
• request_allergy_intolerance_resource

  Manage patient allergy information

  Try:List all allergies for patient 456Try:Add new allergy to patient record
• request_generic_resource

  Operate on any FHIR resource not covered by specific tools

  Try:Get device information for patient 123Try:Update procedure status
• add_document_to_pinecone

  Ingests documents into the vector database for semantic search

  Try:Upload medical report to the systemTry:Process PDF document for search
• search_pinecone

  Performs semantic search across indexed documents using vector embeddings

  Try:Find documents related to diabetes treatmentTry:Search for information about heart medications
• get_loinc_codes

  Retrieves standardized LOINC codes for medical observations and laboratory tests

  Try:Get LOINC codes for lipid panelTry:Find LOINC code for hemoglobin A1c
• request_document_reference_resource

  Manage FHIR DocumentReference resources

  Try:Retrieve all documents for patient 123Try:Update document reference metadata
• request_immunization_resource

  Manage vaccination records

  Try:List all immunizations for patient 456Try:Add new vaccination record

Comparable tools

Installation

FAQ

What FHIR resources does the server support?

The server provides tools for all major FHIR resources with specific tools for selected resource types and a generic tool for others. It covers patient, condition, medication, encounter, and observation resources.

How is sensitive data protected in the configuration?

The server includes built-in encryption for sensitive configuration values like API keys and passwords. It provides both automated and manual setup options for encryption.

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