filesystem vs sparql-llm
Side-by-side comparison to help you pick between these two MCP servers.
filesystem by modelcontextprotocol | sparql-llm by sib-swiss | |
|---|---|---|
| Stars | ★ 85,748 | ★ 108 |
| 30d uses | — | — |
| Score | 77 | 47 |
| Official | ✓ | — |
| Categories | File SystemDeveloper ToolsProductivity | AI / LLM ToolsDeveloper ToolsKnowledge Graph |
| Language | TypeScript | Jupyter Notebook |
| Last commit | this month | this month |
filesystem · Summary
A feature-rich MCP server for filesystem operations with dynamic directory access control.
sparql-llm · Summary
MCP server that helps LLMs generate and validate SPARQL queries for biological knowledge graphs.
filesystem · Use cases
- Enable AI models to read and write project files during development
- Allow Claude or other MCP clients to browse and analyze codebases
- Provide secure sandboxed access to specific directories for content generation
sparql-llm · Use cases
- Helping researchers write SPARQL queries to retrieve biological data from knowledge graphs
- Validating SPARQL queries before execution against biological endpoints
- Enabling LLM assistants to understand biological database schemas and query structures
filesystem · Install
Installation
Using NPX
{
"mcpServers": {
"filesystem": {
"command": "npx",
"args": [
"-y",
"@modelcontextprotocol/server-filesystem",
"/path/to/allowed/directory"
]
}
}
}Using Docker
{
"mcpServers": {
"filesystem": {
"command": "docker",
"args": [
"run",
"-i",
"--rm",
"--mount", "type=bind,src=/path/to/allowed/dir,dst=/projects/allowed/dir",
"mcp/filesystem",
"/projects"
]
}
}
}VS Code Extension
Click the installation buttons in the README to install directly in VS Code.
sparql-llm · Install
Installation
pip install sparql-llmOr with uv:
uv add sparql-llmClaude Desktop Configuration
Add this to your mcp.json file:
{
"servers": {
"expasy-mcp": {
"type": "stdio",
"command": "uvx",
"args": [
"sparql-llm"
]
}
}
}Using HTTP Server
The public HTTP server is available at: https://chat.expasy.org/mcp
In your VSCode mcp.json:
{
"servers": {
"expasy-mcp-http": {
"url": "https://chat.expasy.org/mcp/",
"type": "http"
}
}
}