PDB-MCP-Server vs everything
Side-by-side comparison to help you pick between these two MCP servers.
PDB-MCP-Server by Augmented-Nature | everything by modelcontextprotocol | |
|---|---|---|
| Stars | ★ 24 | ★ 85,748 |
| 30d uses | — | — |
| Score | 42 | 77 |
| Official | — | ✓ |
| Categories | Knowledge GraphAI / LLM ToolsDeveloper Tools | Developer ToolsAI / LLM ToolsOther |
| Language | JavaScript | TypeScript |
| Last commit | 5 mo ago | this month |
PDB-MCP-Server · Summary
An MCP server providing access to Protein Data Bank structures with search, retrieval and download capabilities.
everything · Summary
Official MCP test server exercising all protocol features for client builders.
PDB-MCP-Server · Use cases
- Structural biologists researching protein structures for drug discovery
- Scientists analyzing macromolecular assemblies and their interactions
- Educational institutions providing access to structural biology datasets
everything · Use cases
- Testing MCP client implementations against all protocol features
- Learning MCP protocol capabilities through a reference server
- Validating client compatibility with different transport methods
PDB-MCP-Server · Install
npm install
npm run buildWith Claude Desktop, add to your claude_desktop_config.json:
{
"mcpServers": {
"pdb-server": {
"command": "node",
"args": ["/path/to/pdb-server/build/index.js"]
}
}
}everything · Install
NPX (recommended)
{
"mcpServers": {
"everything": {
"command": "npx",
"args": ["-y", "@modelcontextprotocol/server-everything"]
}
}
}On Windows, use cmd /c:
{
"mcpServers": {
"everything": {
"command": "cmd",
"args": ["/c", "npx", "-y", "@modelcontextprotocol/server-everything"]
}
}
}Docker
{
"mcpServers": {
"everything": {
"command": "docker",
"args": ["run", "-i", "--rm", "mcp/everything"]
}
}
}Global install
npm install -g @modelcontextprotocol/server-everything@latest
npx @modelcontextprotocol/server-everything