AlphaFold-MCP-Server vs everything

Side-by-side comparison to help you pick between these two MCP servers.

	AlphaFold-MCP-Server by Augmented-Nature	everything by modelcontextprotocol
Stars	★ 34	★ 85,748
30d uses	—	—
Score	43	77
Official	—	✓
Categories	AI / LLM ToolsDeveloper ToolsOther	Developer ToolsAI / LLM ToolsOther
Language	JavaScript	TypeScript
Last commit	5 mo ago	this month

AlphaFold-MCP-Server · Summary

A comprehensive MCP server providing access to AlphaFold Protein Structure Database with tools for structure retrieval and analysis.

everything · Summary

Official MCP test server exercising all protocol features for client builders.

AlphaFold-MCP-Server · Use cases

Researchers can quickly retrieve and analyze protein structures for comparative studies
Bioinformaticians can perform batch processing on multiple protein structures simultaneously
Structural biologists can prepare visualization files with confidence score coloring for presentations

everything · Use cases

Testing MCP client implementations against all protocol features
Learning MCP protocol capabilities through a reference server
Validating client compatibility with different transport methods

AlphaFold-MCP-Server · Install

# Clone or create the server directory
npm install

# Build the server
npm run build

Add to your MCP configuration:

{
  "mcpServers": {
    "alphafold-server": {
      "command": "node",
      "args": ["/path/to/alphafold-server/build/index.js"]
    }
  }
}

everything · Install

NPX (recommended)

{
  "mcpServers": {
    "everything": {
      "command": "npx",
      "args": ["-y", "@modelcontextprotocol/server-everything"]
    }
  }
}

On Windows, use cmd /c:

{
  "mcpServers": {
    "everything": {
      "command": "cmd",
      "args": ["/c", "npx", "-y", "@modelcontextprotocol/server-everything"]
    }
  }
}

Docker

{
  "mcpServers": {
    "everything": {
      "command": "docker",
      "args": ["run", "-i", "--rm", "mcp/everything"]
    }
  }
}

Global install

npm install -g @modelcontextprotocol/server-everything@latest
npx @modelcontextprotocol/server-everything

Comparison generated from public README + GitHub signals. Last updated automatically.